Course disputée sur le circuit de Sepang International Circuit
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 46 | Valentino Rossi | Fiat Yamaha Team | 43'07.829 | 21 | 25 | 1 |
| 2 | 65 | Loris Capirossi | Ducati Marlboro Team | 43'08.678 | 21 | 20 | 3 |
| 3 | 26 | Dani Pedrosa | Repsol Honda Team | 43'11.692 | 21 | 16 | 5 |
| 4 | 69 | Nicky Hayden | Repsol Honda Team | 43'13.609 | 21 | 13 | 2 |
| 5 | 15 | Sete Gibernau | Ducati Marlboro Team | 43'17.130 | 21 | 11 | 6 |
| 6 | 21 | John Hopkins | Team Suzuki MotoGP | 43'18.910 | 21 | 10 | 8 |
| 7 | 10 | Kenny Jr Roberts | Team Roberts | 43'19.667 | 21 | 9 | 4 |
| 8 | 27 | Casey Stoner | Lcr Honda | 43'20.096 | 21 | 8 | 10 |
| 9 | 33 | Marco Melandri | Fortuna Honda | 43'22.848 | 21 | 7 | 9 |
| 10 | 5 | Colin Edwards | Camel Yamaha Team | 43'27.738 | 21 | 6 | 11 |
| 11 | 71 | Chris Vermeulen | Team Suzuki MotoGP | 43'32.200 | 21 | 5 | 16 |
| 12 | 7 | Carlos Checa | Tech3 Yamaha | 43'38.713 | 21 | 4 | 15 |
| 13 | 17 | Randy De Puniet | Kawasaki Racing Team | 43'44.016 | 21 | 3 | 7 |
| 14 | 6 | Makoto Tamada | Konica Minolta Honda | 43'56.606 | 21 | 2 | 13 |
| 15 | 66 | Alexander Hofmann | Pramac d\'Antin MotoGP | 44'06.910 | 21 | 1 | 17 |
| 16 | 77 | James Ellison | Tech3 Yamaha | 44'13.616 | 21 | 0 | 18 |
| 17 | 30 | Jose Luis Cardoso | Pramac d\'Antin MotoGP | 44'45.691 | 21 | 0 | 19 |
| 18 | 24 | Toni Elias | Fortuna Honda | 20'39.952 | 10 | 0 | 14 |
| 19 | 56 | Shinya Nakano | Kawasaki Racing Team | 0 | 0 | 12 |