Course disputée sur le circuit de Sepang International Circuit
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 46 | Valentino Rossi | Fiat Yamaha Team | 23:50:29 | 21 | 25 | 1 |
| 2 | 65 | Loris Capirossi | Ducati Marlboro Team | 00:04:38 | 21 | 20 | 3 |
| 3 | 26 | Dani Pedrosa | Repsol Honda Team | 00:54:52 | 21 | 16 | 5 |
| 4 | 69 | Nicky Hayden | Repsol Honda Team | 01:26:49 | 21 | 13 | 2 |
| 5 | 15 | Sete Gibernau | Ducati Marlboro Team | 02:25:30 | 21 | 11 | 6 |
| 6 | 21 | John Hopkins | Team Suzuki MotoGP | 02:55:10 | 21 | 10 | 8 |
| 7 | 10 | Kenny Jr Roberts | Team Roberts | 03:07:47 | 21 | 9 | 4 |
| 8 | 27 | Casey Stoner | Lcr Honda | 03:14:56 | 21 | 8 | 10 |
| 9 | 33 | Marco Melandri | Fortuna Honda | 04:00:48 | 21 | 7 | 9 |
| 10 | 5 | Colin Edwards | Camel Yamaha Team | 05:22:18 | 21 | 6 | 11 |
| 11 | 71 | Chris Vermeulen | Team Suzuki MotoGP | 06:36:40 | 21 | 5 | 16 |
| 12 | 7 | Carlos Checa | Tech3 Yamaha | 08:25:13 | 21 | 4 | 15 |
| 13 | 17 | Randy De Puniet | Kawasaki Racing Team | 09:53:36 | 21 | 3 | 7 |
| 14 | 6 | Makoto Tamada | Konica Minolta Honda | 13:23:26 | 21 | 2 | 13 |
| 15 | 66 | Alexander Hofmann | Pramac d\'Antin MotoGP | 16:15:10 | 21 | 1 | 17 |
| 16 | 77 | James Ellison | Tech3 Yamaha | 18:06:56 | 21 | 0 | 18 |
| 17 | 30 | Jose Luis Cardoso | Pramac d\'Antin MotoGP | 03:01:31 | 21 | 0 | 19 |
| 18 | 24 | Toni Elias | Fortuna Honda | 09:25:52 | 10 | 0 | 14 |
| 19 | 56 | Shinya Nakano | Kawasaki Racing Team | 01:00:00 | 0 | 0 | 12 |