Course disputée sur le circuit de Automotodrom Brno
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 65 | Loris Capirossi | Ducati Marlboro Team | 08:49:05 | 22 | 25 | 2 |
| 2 | 46 | Valentino Rossi | Fiat Yamaha Team | 10:10:47 | 22 | 20 | 1 |
| 3 | 26 | Dani Pedrosa | Repsol Honda Team | 11:02:37 | 22 | 16 | 9 |
| 4 | 10 | Kenny Jr Roberts | Team Roberts | 12:55:45 | 22 | 13 | 3 |
| 5 | 33 | Marco Melandri | Fortuna Honda | 12:59:30 | 22 | 11 | 11 |
| 6 | 27 | Casey Stoner | Lcr Honda | 13:10:44 | 22 | 10 | 12 |
| 7 | 21 | John Hopkins | Team Suzuki MotoGP | 13:28:40 | 22 | 9 | 7 |
| 8 | 56 | Shinya Nakano | Kawasaki Racing Team | 13:31:27 | 22 | 8 | 5 |
| 9 | 69 | Nicky Hayden | Repsol Honda Team | 13:33:26 | 22 | 7 | 4 |
| 10 | 5 | Colin Edwards | Camel Yamaha Team | 14:13:00 | 22 | 6 | 8 |
| 11 | 24 | Toni Elias | Fortuna Honda | 14:59:20 | 22 | 5 | 6 |
| 12 | 71 | Chris Vermeulen | Team Suzuki MotoGP | 15:28:43 | 22 | 4 | 13 |
| 13 | 6 | Makoto Tamada | Konica Minolta Honda | 15:45:12 | 22 | 3 | 15 |
| 14 | 17 | Randy De Puniet | Kawasaki Racing Team | 16:51:46 | 22 | 2 | 10 |
| 15 | 7 | Carlos Checa | Tech3 Yamaha | 16:57:21 | 22 | 1 | 17 |
| 16 | 66 | Alexander Hofmann | Pramac d\'Antin MotoGP | 17:05:46 | 22 | 0 | 14 |
| 17 | 77 | James Ellison | Tech3 Yamaha | 02:18:47 | 22 | 0 | 16 |
| 18 | 22 | Ivan Silva | Pramac d\'Antin MotoGP | 13:55:20 | 22 | 0 | 19 |
| 19 | 30 | Jose Luis Cardoso | Pramac d\'Antin MotoGP | 19:08:25 | 6 | 0 | 18 |