Course disputée sur le circuit de Automotodrom Brno
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 65 | Loris Capirossi | Ducati Marlboro Team | 43'40.145 | 22 | 25 | 2 |
| 2 | 46 | Valentino Rossi | Fiat Yamaha Team | 43'45.047 | 22 | 20 | 1 |
| 3 | 26 | Dani Pedrosa | Repsol Honda Team | 43'48.157 | 22 | 16 | 9 |
| 4 | 10 | Kenny Jr Roberts | Team Roberts | 43'54.945 | 22 | 13 | 3 |
| 5 | 33 | Marco Melandri | Fortuna Honda | 43'55.170 | 22 | 11 | 11 |
| 6 | 27 | Casey Stoner | Lcr Honda | 43'55.844 | 22 | 10 | 12 |
| 7 | 21 | John Hopkins | Team Suzuki MotoGP | 43'56.920 | 22 | 9 | 7 |
| 8 | 56 | Shinya Nakano | Kawasaki Racing Team | 43'57.087 | 22 | 8 | 5 |
| 9 | 69 | Nicky Hayden | Repsol Honda Team | 43'57.206 | 22 | 7 | 4 |
| 10 | 5 | Colin Edwards | Camel Yamaha Team | 43'59.580 | 22 | 6 | 8 |
| 11 | 24 | Toni Elias | Fortuna Honda | 44'02.360 | 22 | 5 | 6 |
| 12 | 71 | Chris Vermeulen | Team Suzuki MotoGP | 44'04.123 | 22 | 4 | 13 |
| 13 | 6 | Makoto Tamada | Konica Minolta Honda | 44'05.112 | 22 | 3 | 15 |
| 14 | 17 | Randy De Puniet | Kawasaki Racing Team | 44'09.106 | 22 | 2 | 10 |
| 15 | 7 | Carlos Checa | Tech3 Yamaha | 44'09.441 | 22 | 1 | 17 |
| 16 | 66 | Alexander Hofmann | Pramac d\'Antin MotoGP | 44'09.946 | 22 | 0 | 14 |
| 17 | 77 | James Ellison | Tech3 Yamaha | 44'43.127 | 22 | 0 | 16 |
| 18 | 22 | Ivan Silva | Pramac d\'Antin MotoGP | 45'24.920 | 22 | 0 | 19 |
| 19 | 30 | Jose Luis Cardoso | Pramac d\'Antin MotoGP | 12'36.505 | 6 | 0 | 18 |