Course disputée sur le circuit de Sepang International Circuit
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 46 | Valentino Rossi | Fiat Yamaha Team | 43'06.007 | 21 | 25 | 2 |
| 2 | 2 | Dani Pedrosa | Repsol Honda Team | 43'10.015 | 21 | 20 | 1 |
| 3 | 4 | Andrea Dovizioso | Jir Team Scot MotoGP | 43'14.543 | 21 | 16 | 6 |
| 4 | 69 | Nicky Hayden | Repsol Honda Team | 43'14.865 | 21 | 13 | 4 |
| 5 | 56 | Shinya Nakano | San Carlo Honda Gresini | 43'16.590 | 21 | 11 | 15 |
| 6 | 1 | Casey Stoner | Ducati Marlboro Team | 43'19.647 | 21 | 10 | 7 |
| 7 | 65 | Loris Capirossi | Rizla Suzuki MotoGP | 43'21.943 | 21 | 9 | 8 |
| 8 | 5 | Colin Edwards | Tech3 Yamaha | 43'24.809 | 21 | 8 | 5 |
| 9 | 7 | Chris Vermeulen | Rizla Suzuki MotoGP | 43'29.181 | 21 | 7 | 11 |
| 10 | 14 | Randy De Puniet | LCR Honda MotoGP | 43'31.523 | 21 | 6 | 9 |
| 11 | 21 | John Hopkins | Kawasaki Racing Team | 43'33.616 | 21 | 5 | 10 |
| 12 | 13 | Anthony West | Kawasaki Racing Team | 43'47.406 | 21 | 4 | 13 |
| 13 | 50 | Sylvain Guintoli | Alice Team | 43'51.624 | 21 | 3 | 16 |
| 14 | 15 | Alex De Angelis | San Carlo Honda Gresini | 43'55.010 | 21 | 2 | 17 |
| 15 | 24 | Toni Elias | Alice Team | 44'05.146 | 21 | 1 | 19 |
| 16 | 33 | Marco Melandri | Ducati Marlboro Team | 44'09.335 | 21 | 0 | 14 |
| 17 | 9 | Nobuatsu Aoki | Rizla Suzuki MotoGP | 44'54.370 | 21 | 0 | 18 |
| 18 | 48 | Jorge Lorenzo | Fiat Yamaha Team | 25'38.557 | 9 | 0 | 3 |
| 19 | 52 | James Toseland | Tech3 Yamaha | 4'19.122 | 19 | 0 | 12 |