Course disputée sur le circuit de Automotodrom Brno
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 27 | Casey Stoner | Ducati Marlboro Team | 10:23:30 | 22 | 25 | 1 |
| 2 | 21 | John Hopkins | Rizla Suzuki MotoGP | 12:35:13 | 22 | 20 | 4 |
| 3 | 1 | Nicky Hayden | Repsol Honda Team | 14:01:50 | 22 | 16 | 2 |
| 4 | 26 | Dani Pedrosa | Repsol Honda Team | 14:46:50 | 22 | 13 | 3 |
| 5 | 71 | Chris Vermeulen | Rizla Suzuki MotoGP | 15:11:53 | 22 | 11 | 8 |
| 6 | 65 | Loris Capirossi | Ducati Marlboro Team | 15:46:13 | 22 | 10 | 7 |
| 7 | 46 | Valentino Rossi | Fiat Yamaha Team | 16:38:15 | 22 | 9 | 6 |
| 8 | 14 | Randy De Puniet | Kawasaki Racing Team | 16:48:03 | 22 | 8 | 5 |
| 9 | 4 | Alex Barros | Pramac d\'Antin | 19:21:42 | 22 | 7 | 13 |
| 10 | 7 | Carlos Checa | LCR Honda MotoGP | 20:09:23 | 22 | 6 | 12 |
| 11 | 24 | Toni Elias | San Carlo Honda Gresini | 20:52:38 | 22 | 5 | 14 |
| 12 | 13 | Anthony West | Kawasaki Racing Team | 21:01:00 | 22 | 4 | 16 |
| 13 | 50 | Sylvain Guintoli | Tech3 Yamaha | 22:31:44 | 22 | 3 | 10 |
| 14 | 56 | Shinya Nakano | Konica Minolta Honda | 02:14:39 | 22 | 2 | 11 |
| 15 | 80 | Kurtis Roberts | Team Roberts | 05:43:33 | 22 | 1 | 17 |
| 16 | 22 | Ivan Silva | Pramac d\'Antin | 09:00:20 | 22 | 0 | 18 |
| 17 | 6 | Makoto Tamada | Tech3 Yamaha | 10:13:34 | 22 | 0 | 15 |
| 18 | 5 | Colin Edwards | Fiat Yamaha Team | 19:17:54 | 20 | 0 | 9 |