Course disputée sur le circuit de Automotodrom Brno
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 27 | Casey Stoner | Ducati Marlboro Team | 43'45.810 | 22 | 25 | 1 |
| 2 | 21 | John Hopkins | Rizla Suzuki MotoGP | 43'53.713 | 22 | 20 | 4 |
| 3 | 1 | Nicky Hayden | Repsol Honda Team | 43'58.910 | 22 | 16 | 2 |
| 4 | 26 | Dani Pedrosa | Repsol Honda Team | 44'01.610 | 22 | 13 | 3 |
| 5 | 71 | Chris Vermeulen | Rizla Suzuki MotoGP | 44'03.113 | 22 | 11 | 8 |
| 6 | 65 | Loris Capirossi | Ducati Marlboro Team | 44'05.173 | 22 | 10 | 7 |
| 7 | 46 | Valentino Rossi | Fiat Yamaha Team | 44'08.295 | 22 | 9 | 6 |
| 8 | 14 | Randy De Puniet | Kawasaki Racing Team | 44'08.883 | 22 | 8 | 5 |
| 9 | 4 | Alex Barros | Pramac d\'Antin | 44'18.102 | 22 | 7 | 13 |
| 10 | 7 | Carlos Checa | LCR Honda MotoGP | 44'20.963 | 22 | 6 | 12 |
| 11 | 24 | Toni Elias | San Carlo Honda Gresini | 44'23.558 | 22 | 5 | 14 |
| 12 | 13 | Anthony West | Kawasaki Racing Team | 44'24.060 | 22 | 4 | 16 |
| 13 | 50 | Sylvain Guintoli | Tech3 Yamaha | 44'29.504 | 22 | 3 | 10 |
| 14 | 56 | Shinya Nakano | Konica Minolta Honda | 44'42.879 | 22 | 2 | 11 |
| 15 | 80 | Kurtis Roberts | Team Roberts | 44'55.413 | 22 | 1 | 17 |
| 16 | 22 | Ivan Silva | Pramac d\'Antin | 45'07.220 | 22 | 0 | 18 |
| 17 | 6 | Makoto Tamada | Tech3 Yamaha | 45'11.614 | 22 | 0 | 15 |
| 18 | 5 | Colin Edwards | Fiat Yamaha Team | 5'25.074 | 20 | 0 | 9 |