Course disputée sur le circuit de Sepang International Circuit
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 27 | Casey Stoner | Ducati Marlboro Team | 47'24.834 | 21 | 25 | 4 |
| 2 | 3 | Dani Pedrosa | Repsol Honda Team | 47'39.500 | 21 | 20 | 3 |
| 3 | 46 | Valentino Rossi | Fiat Yamaha Team | 47'44.219 | 21 | 16 | 1 |
| 4 | 99 | Jorge Lorenzo | Fiat Yamaha Team | 47'50.684 | 21 | 13 | 2 |
| 5 | 69 | Nicky Hayden | Ducati Marlboro Team | 48'03.539 | 21 | 11 | 7 |
| 6 | 7 | Chris Vermeulen | Rizla Suzuki MotoGP | 48'05.895 | 21 | 10 | 14 |
| 7 | 24 | Toni Elias | San Carlo Honda Gresini | 48'13.389 | 21 | 9 | 6 |
| 8 | 33 | Marco Melandri | Kawasaki Racing Team | 48'20.391 | 21 | 8 | 15 |
| 9 | 65 | Loris Capirossi | Rizla Suzuki MotoGP | 48'25.137 | 21 | 7 | 5 |
| 10 | 36 | Mika Kallio | Pramac Racing | 48'25.274 | 21 | 6 | 12 |
| 11 | 44 | Aleix Espargaro | Pramac d\'Antin | 48'26.489 | 21 | 5 | 13 |
| 12 | 15 | Alex De Angelis | San Carlo Honda Gresini | 48'26.681 | 21 | 4 | 10 |
| 13 | 5 | Colin Edwards | Tech3 Yamaha | 48'35.612 | 21 | 3 | 9 |
| 14 | 41 | Gabor Talmacsi | Scot Racing Team MotoGP | 48'40.685 | 21 | 2 | 17 |
| 15 | 52 | James Toseland | Tech3 Yamaha | 49'15.506 | 21 | 1 | 16 |
| 16 | 4 | Andrea Dovizioso | Repsol Honda Team | 31'59.321 | 14 | 0 | 11 |
| 17 | 14 | Randy De Puniet | LCR Honda MotoGP | 2'28.718 | 1 | 0 | 8 |