Course disputée sur le circuit de Sepang International Circuit
| Position | Numéro | Pilote | Team | Temps | Tours | Points | Départ |
|---|---|---|---|---|---|---|---|
| 1 | 46 | Valentino Rossi | Repsol Honda Team | 43'41.457 | 21 | 25 | 1 |
| 2 | 15 | Sete Gibernau | Telefonica Movistar Honda | 43'43.499 | 21 | 20 | 7 |
| 3 | 3 | Max Biaggi | Camel Pramac Pons | 43'49.101 | 21 | 16 | 4 |
| 4 | 69 | Nicky Hayden | Repsol Honda Team | 43'55.190 | 21 | 13 | 9 |
| 5 | 7 | Carlos Checa | Fortuna Yamaha MotoGP | 43'55.246 | 21 | 11 | 2 |
| 6 | 65 | Loris Capirossi | Ducati Marlboro Team | 44'02.024 | 21 | 10 | 6 |
| 7 | 11 | Tohru Ukawa | Camel Pramac Pons | 44'04.906 | 21 | 9 | 8 |
| 8 | 56 | Shinya Nakano | D\'antin MotoGP | 44'08.197 | 21 | 8 | 5 |
| 9 | 12 | Troy Bayliss | Ducati Marlboro Team | 44'13.606 | 21 | 7 | 11 |
| 10 | 6 | Makoto Tamada | Pramac Racing | 44'22.013 | 21 | 6 | 3 |
| 11 | 33 | Marco Melandri | Fortuna Yamaha MotoGP | 44'25.320 | 21 | 5 | 14 |
| 12 | 41 | Noriyuki Haga | Alice Aprilia Racing | 44'26.070 | 21 | 4 | 17 |
| 13 | 45 | Colin Edwards | Alice Aprilia Racing | 44'36.124 | 21 | 3 | 13 |
| 14 | 10 | Kenny Jr Roberts | Suzuki Grand Prix Team | 44'44.144 | 21 | 2 | 10 |
| 15 | 4 | Alex Barros | Gauloises Yamaha Team | 44'44.463 | 21 | 1 | 12 |
| 16 | 88 | Andrew Pitt | Kawasaki Racing Team | 44'47.585 | 21 | 0 | 20 |
| 17 | 99 | Jeremy McWilliams | Proton Team KR | 44'52.373 | 21 | 0 | 18 |
| 18 | 9 | Nobuatsu Aoki | Proton Team KR | 44'52.801 | 21 | 0 | 19 |
| 19 | 8 | Garry McCoy | Kawasaki Racing Team | 44'58.662 | 21 | 0 | 16 |
| 20 | 43 | Akira Ryo | Team Suzuki MotoGP | 45'22.772 | 21 | 0 | 15 |
| 21 | 23 | Ryuichi Kiyonari | Telefonica Movistar Honda | 45'30.551 | 21 | 0 | 21 |
| 22 | 52 | David De Gea | WCM | 39'38.501 | 18 | 0 | 22 |
| 23 | 35 | Chris Burns | WCM | 26'58.114 | 12 | 0 | 24 |
| 24 | 19 | Olivier Jacque | Gauloises Yamaha Team | 0 | 0 | 23 |